Diagnosis of an unidentified sturgeon species using the complete mitochondrial DNA.
Identifieur interne : 000145 ( Main/Exploration ); précédent : 000144; suivant : 000146Diagnosis of an unidentified sturgeon species using the complete mitochondrial DNA.
Auteurs : Jeong-Nam Yu ; Myounghai Kwak ; Seon-Man Kweon ; O-Nam Kwon [Corée du Sud]Source :
- Mitochondrial DNA [ 1940-1744 ] ; 2015.
English descriptors
- KwdEn :
- MESH :
- chemical : DNA, Mitochondrial.
- classification : Fishes.
- genetics : Fishes.
- Animals, Genes, Mitochondrial, Genome, Mitochondrial, Open Reading Frames, Sequence Analysis, DNA.
Abstract
A sturgeon of unknown species of 11 kg body weight was caught in Gosung-gun, Gangwon Province, Korea (38°17'10.67″N, 128°33'20.28″E). The morphological characteristics were similar to species of the genus Acipenser such as Acipenser medirostris, A. schrenckii and A. baerii, but it was not an obvious match. To identify the species using genetic tools, we analysed the complete mitogenome of this unidentified sturgeon, and found it to comprise 16,526 bp. The genome encoded 2 rRNAs, 22 tRNAs, 13 protein-coding genes and 1 control region. The nucleotide divergence between the complete mitogenome of the unidentified sturgeon and those of four Acipenser spp. (A. transmontanus, A. dabryanus, A. schrenckii and A. baerii) was 0.736%, 3.875%, 0.085% and 5.580%, respectively. This study suggests that the unidentified sturgeon is able to predict the least maternal lines with A. schrenckii.
DOI: 10.3109/19401736.2013.855905
PubMed: 24409856
Affiliations:
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first="Seon-Man" last="Kweon">Seon-Man Kweon</name><affiliation><nlm:affiliation>a National Institute of Biological Resources, Environmental Research Complex, Gyeongseo-dong, Seo-gu , Incheon , Korea and.</nlm:affiliation><wicri:noCountry code="subField">Korea and</wicri:noCountry></affiliation></author><author><name sortKey="Kwon, O Nam" sort="Kwon, O Nam" uniqKey="Kwon O" first="O-Nam" last="Kwon">O-Nam Kwon</name><affiliation wicri:level="1"><nlm:affiliation>b Marine Biology Center for Research and Education, Gangneung-Wonju National University , Gangneung , Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>b Marine Biology Center for Research and Education, Gangneung-Wonju National University , Gangneung </wicri:regionArea><wicri:noRegion>Gangneung </wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:24409856</idno><idno 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sortKey="Yu, Jeong Nam" sort="Yu, Jeong Nam" uniqKey="Yu J" first="Jeong-Nam" last="Yu">Jeong-Nam Yu</name><affiliation><nlm:affiliation>a National Institute of Biological Resources, Environmental Research Complex, Gyeongseo-dong, Seo-gu , Incheon , Korea and.</nlm:affiliation><wicri:noCountry code="subField">Korea and</wicri:noCountry></affiliation></author><author><name sortKey="Kwak, Myounghai" sort="Kwak, Myounghai" uniqKey="Kwak M" first="Myounghai" last="Kwak">Myounghai Kwak</name><affiliation><nlm:affiliation>a National Institute of Biological Resources, Environmental Research Complex, Gyeongseo-dong, Seo-gu , Incheon , Korea and.</nlm:affiliation><wicri:noCountry code="subField">Korea and</wicri:noCountry></affiliation></author><author><name sortKey="Kweon, Seon Man" sort="Kweon, Seon Man" uniqKey="Kweon S" first="Seon-Man" last="Kweon">Seon-Man Kweon</name><affiliation><nlm:affiliation>a National Institute of Biological Resources, Environmental Research Complex, Gyeongseo-dong, Seo-gu , Incheon , Korea and.</nlm:affiliation><wicri:noCountry code="subField">Korea and</wicri:noCountry></affiliation></author><author><name sortKey="Kwon, O Nam" sort="Kwon, O Nam" uniqKey="Kwon O" first="O-Nam" last="Kwon">O-Nam Kwon</name><affiliation wicri:level="1"><nlm:affiliation>b Marine Biology Center for Research and Education, Gangneung-Wonju National University , Gangneung , Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>b Marine Biology Center for Research and Education, Gangneung-Wonju National University , Gangneung </wicri:regionArea><wicri:noRegion>Gangneung </wicri:noRegion></affiliation></author></analytic><series><title level="j">Mitochondrial DNA</title><idno type="eISSN">1940-1744</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>DNA, Mitochondrial</term><term>Fishes (classification)</term><term>Fishes (genetics)</term><term>Genes, Mitochondrial</term><term>Genome, Mitochondrial</term><term>Open Reading Frames</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA, Mitochondrial</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Fishes</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fishes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genes, Mitochondrial</term><term>Genome, Mitochondrial</term><term>Open Reading Frames</term><term>Sequence Analysis, DNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A sturgeon of unknown species of 11 kg body weight was caught in Gosung-gun, Gangwon Province, Korea (38°17'10.67″N, 128°33'20.28″E). The morphological characteristics were similar to species of the genus Acipenser such as Acipenser medirostris, A. schrenckii and A. baerii, but it was not an obvious match. To identify the species using genetic tools, we analysed the complete mitogenome of this unidentified sturgeon, and found it to comprise 16,526 bp. The genome encoded 2 rRNAs, 22 tRNAs, 13 protein-coding genes and 1 control region. The nucleotide divergence between the complete mitogenome of the unidentified sturgeon and those of four Acipenser spp. (A. transmontanus, A. dabryanus, A. schrenckii and A. baerii) was 0.736%, 3.875%, 0.085% and 5.580%, respectively. This study suggests that the unidentified sturgeon is able to predict the least maternal lines with A. schrenckii.</div></front></TEI><affiliations><list><country><li>Corée du Sud</li></country></list><tree><noCountry><name sortKey="Kwak, Myounghai" sort="Kwak, Myounghai" uniqKey="Kwak M" first="Myounghai" last="Kwak">Myounghai Kwak</name><name sortKey="Kweon, Seon Man" sort="Kweon, Seon Man" uniqKey="Kweon S" first="Seon-Man" last="Kweon">Seon-Man Kweon</name><name sortKey="Yu, Jeong Nam" sort="Yu, Jeong Nam" uniqKey="Yu J" first="Jeong-Nam" last="Yu">Jeong-Nam Yu</name></noCountry><country name="Corée du Sud"><noRegion><name sortKey="Kwon, O Nam" sort="Kwon, O Nam" uniqKey="Kwon O" first="O-Nam" last="Kwon">O-Nam Kwon</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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